Stochastic Roadmap Simulation¶
Apaydin, M. S., Brutlag, D. L., Guestrin, C., Hsu, D., Latombe, J., & Varma, C. (2003). Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. Journal of Computational Biology, 3-4.
Cited by¶
2 citations across 1 artifact.
Domain-specific¶
- Stochastic Roadmap Simulation
- Ensemble quantities—folding probability, first-passage or escape time, reaction-pathway use, and related kinetic observables—are then computed over the graph, often by first-step equations, rather than estimated solely from a collection of explicit long trajectories.
- Sparse coverage of bottlenecks can dominate error even when graph calculations are exact; convergence must therefore be assessed as the roadmap is refined.
Verification¶
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